- enhance the intensity by an order of magnitude
- look only at the tails of the peaks
- aim for symmetry
When the first increment is OK, proceed with the two FFT performed on the whole matrix. It may happen that the optimal phase correction of the matrix differs, by a few degrees, by what seemed optimal for the first increment.
By correcting the first increment, you set the phase along the direct dimension. That is really variable and unpredictable. Along the other dimension, the indirect one, I often find that it's enough to set the first order phase correction = 180º (for a NOESY, also set the zero order phase correction = 90º). If this is not your case, set both corrections to zero, set the "pivot" at the center (wrong term, it's a cursor that freezes the phase at a given point of the spectrum). It should be enough to optimize the first order phase correction.
Mono-dimensional Correction
It is possible, and advisable, to correct the phase without even touching the control for zero-order correction. Start with an automatic phase correction. Enhance the peaks 10 times. Set the "pivot" on the more-in-phase peak. Optimize the first order correction, focusing on a peak far from the pivot. Enhance the peaks twice (every time you do so you'll notice a residual asymmetry). Move the pivot on the most symmetric peak and continue adjusting. After a while, every peak will be perfectly symmetric, even if you continue enhancing the intensity. Adopting this method, correcting the phase will be simpler than adjusting the volume of your speakers!
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